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18 Open 64 Closed
18 Open 64 Closed
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Issues list

improve slurm complete/error email to describe where the pipeline output is RENEE RepoName
#148 opened Aug 5, 2024 by kelly-sovacool
deprecate older genome versions after ~1 year, link to dockstore RENEE RepoName
#145 opened Aug 5, 2024 by kelly-sovacool
feature: DTU - differential transcript usage enhancement New feature or request RENEE RepoName
#144 opened Aug 5, 2024 by kelly-sovacool
write output fastq validator to a log file instead of an output file enhancement New feature or request RENEE RepoName
#140 opened Aug 2, 2024 by kelly-sovacool
consolidate build_cluster.json with cluster.json RENEE RepoName
#125 opened Apr 30, 2024 by kelly-sovacool 2024-06
@kelly-sovacool
Add QC check if no reads are left after cutadapt bug Something isn't working RENEE RepoName
#118 opened Feb 20, 2024 by slsevilla 2024-06
@kelly-sovacool
1
RNA Report is failing with too few samples. bug Something isn't working RENEE RepoName
#117 opened Feb 16, 2024 by slsevilla
@kelly-sovacool
STAR command is not using TMP dir - moving and removing files created in the outputdir bug Something isn't working question Further information is requested RENEE RepoName wait_for_nxf waiting to fix this issue until we convert to nextflow
#116 opened Feb 16, 2024 by slsevilla 2024-06
Feature request: Add "annoFuse" enhancement New feature or request RENEE RepoName
#112 opened Feb 8, 2024 by kopardev
@kelly-sovacool
1
Feature Request: Add "STAR-Fusion" enhancement New feature or request RENEE RepoName
#111 opened Feb 8, 2024 by kopardev
@kelly-sovacool
Add HS1/T2T as genome reference enhancement New feature or request low priority RENEE RepoName
#109 opened Jan 29, 2024 by slsevilla
2 tasks
@kelly-sovacool @slsevilla
2
Renee build: qualimapinfo errors bug Something isn't working RENEE RepoName
#106 opened Jan 26, 2024 by slsevilla
@kelly-sovacool @slsevilla
1
Support Arriba for other genomes enhancement New feature or request RENEE RepoName
#90 opened Jan 11, 2024 by kelly-sovacool 2024-06
@kelly-sovacool
2
Migrate all resources to S3 bucket enhancement New feature or request RENEE RepoName
#89 opened Jan 11, 2024 by kelly-sovacool 2024-06
@kelly-sovacool
Feature: add dupradar RENEE RepoName
#32 opened Sep 8, 2023 by kopardev
@kelly-sovacool
1
Feature: add sortmerna to remove rRNA reads prior to alignment RENEE RepoName
#31 opened Sep 8, 2023 by kopardev
@kelly-sovacool
No Genomic BAM RENEE RepoName
#30 opened Sep 6, 2023 by kopardev
@kelly-sovacool
1
Aribba support for hg19 and mm39 enhancement New feature or request RENEE RepoName
#12 opened Aug 29, 2023 by kopardev 2024-06
@kelly-sovacool
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