Release v0.0.3

l2p

List to pathway, or l2p, is an R package for the gene set enrichment that is optimized for speed!

Installation

To install l2p from command-line, please run the following command:

# Get l2p from Github
wget https://github.com/CCBR/l2p/raw/master/l2p_0.0-3.tar.gz
# Install as a site package 
R CMD INSTALL l2p_0.0-3.tar.gz

Please note: l2p can also be installed inside an R console or RStudio. Please run the following command to install l2p within R:

 install.packages("https://github.com/CCBR/l2p/raw/master/l2p_0.0-3.tar.gz", repos=NULL) 

Example Usage:

library(l2p)
genes <- c("TP53", "PTEN", "APC")
x = l2p(as.vector(genes))
options(max.print=1000000)
options(width=10000)
print(x)