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Release of Jovian 1.2.0
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@florianzwagemaker florianzwagemaker released this 11 Dec 15:03
· 57 commits to master since this release
v1.2.0
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Learn about vigilant mode.

This update includes exclusively changes to the Nanopore reference alignment workflow.

Some notable changes are as follows:

  • Significant speed improvements. The Jovian 1.2.0 nanopore workflow brings the average runtime down to about 20 minutes per sample whereas the previous version required an average 3 hours per sample

  • Improved cleaning of adapters. Jovian 1.2.0 no longer relies on PoreChop in order to remove adapters from the reads.

  • Improved removal of primer sequences. The processes of removing adapters and removing primer sequences are more finetuned to clean reads more precisely and more consistently.

  • Inclusion of "safety nets" in order to properly parse the primer sequences given by the user

  • A new, custom, consensus caller that is able to correct for sequencing and alignment errors up to 1 codon within an ORF.

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