v1.7.3.4

GetOrganelleLib/assembly_parser.py

@@ -3985,4 +3985,5 @@ def get_graph_coverages_range_simple(fasta_matrix, drop_low_percent=0.10, drop_h
         cov_mean, cov_std = weighted_mean_and_std_np_free(coverages, lengths)
     except ZeroDivisionError:
         cov_mean, cov_std = 0., 0.
+        coverages = [0.]
     return max(cov_mean - cov_std, min(coverages)), cov_mean, min(cov_mean + cov_std, max(coverages))

GetOrganelleLib/versions.py

@@ -5,13 +5,22 @@ def get_versions():
 
 
 versions = [
+    {
+        "number": "1.7.3.4",
+        "features": [
+            "1. fix bugs with '--config-dir'",
+            "2. customized databases (--genes/--ex-genes) passed to slim during pre-assembly & depth estimation",
+            "3. fix a bug with get_graph_coverages_range_simple() when no contigs received"
+        ],
+        "time": "2021-02-18 19:00 UTC+8"
+    },
     {
         "number": "1.7.3.4-pre",
         "features": [
             "1. fix bugs with '--config-dir'",
             "2. customized databases (--genes/--ex-genes) passed to slim during pre-assembly & depth estimation",
         ],
-        "time": "2021-02-11 01:00 UTC+8"
+        "time": "2021-02-12 02:00 UTC+8"
     },
     {
         "number": "1.7.3.3",

README.md

@@ -5,7 +5,7 @@
 [![Anaconda-Server Badge](https://anaconda.org/bioconda/getorganelle/badges/latest_release_date.svg)](https://anaconda.org/bioconda/getorganelle)
 
 [![GitHub release](https://img.shields.io/github/release/Kinggerm/GetOrganelle.svg)](https://github.com/Kinggerm/GetOrganelle/releases/)
-[![GitHub version](https://img.shields.io/github/commits-since/Kinggerm/GetOrganelle/1.7.3.3.svg)](https://github.com/Kinggerm/GetOrganelle/commit/master)
+[![GitHub version](https://img.shields.io/github/commits-since/Kinggerm/GetOrganelle/1.7.3.4.svg)](https://github.com/Kinggerm/GetOrganelle/commit/master)
 
 This toolkit assemblies organelle genome from genomic skimming data.