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Kinggerm edited this page Apr 13, 2021
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- Option 1. Use conda - one-command for GetOrganelle & all required dependencies.
- Option 2. Using the setup.py
- Option 3. In situ configuration - for developers
- Updating GetOrganelle
- Dependencies
- Default Database Directory
- Option 1. Initialization from Github - recommended, one-command
- Option 2. Initialization using local files
- Example 1 - a one-minute testing dataset.
- Example 2 - the same testing dataset with a user-defined seed.
- Example 3 - Plastome (chloroplast genome) assembly using a real dataset.
- Example 4 - Animal mitogenome assembly using a real dataset.
- Example 5 - Fungal mitogenome assembly using a real dataset.