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Use subsets as collection of cell populations bioassays #1175

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arteymix opened this issue Jul 4, 2024 · 0 comments
Open

Use subsets as collection of cell populations bioassays #1175

arteymix opened this issue Jul 4, 2024 · 0 comments
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single cell Issues related to single-cell data support

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@arteymix
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arteymix commented Jul 4, 2024

The ExpressionExperimentSubSet model is well suited for holding bioassays for cell populations.

How we operate is that we create sub-biomaterials for each subject and cell type in the experiment and then create one subset by cell type to hold the bioassays.

Subsets were originally designed to reference bioassays from a source experiment. However, in this case, they effectively own bioassays of cell-subject populations. This means we have to adapt them so that if the set is removed, those bioassays are removed as well.

@arteymix arteymix added the single cell Issues related to single-cell data support label Jul 4, 2024
@arteymix arteymix self-assigned this Jul 4, 2024
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