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295 Open 712 Closed
295 Open 712 Closed
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Issues list

Invalid character found in the request target for a URL apparently coming from GemBrow bug high priority Issues that require immediate attention
#1214 opened Aug 29, 2024 by arteymix 1.31.11
@arteymix
Support reading cell IDs from MEX datasets with cells.tsv.gz low priority single cell Issues related to single-cell data support
#1213 opened Aug 27, 2024 by arteymix
1
Read NCBI API key from NCBI_API_KEY cli Issues affecting the CLI enhancement Enhance the code or user experience low priority
#1212 opened Aug 27, 2024 by arteymix
Handle MEX datasets with barcode_metadata.tsv.gz files enhancement Enhance the code or user experience low priority single cell Issues related to single-cell data support
#1210 opened Aug 27, 2024 by arteymix
1
Ignore small experiments when splitting on import bug
#1208 opened Aug 21, 2024 by arteymix 1.31.11
Restrict genes by platforms when searching them in the experiment page
#1207 opened Aug 16, 2024 by arteymix
3
DWR exceptions are not logged server-side enhancement Enhance the code or user experience gui Issues or pull requests involving the Web UI
#1206 opened Aug 14, 2024 by arteymix 1.31.11
FactorValueValue objects are not fully populated for experimentalFactors for getDatasetDifferentialExpressionAnalyses endpoint rest-api Issues or pull requests involving the RESTful API
#1201 opened Aug 8, 2024 by oganm 1.31.11
7
Error marshalling java.lang.Long: Format error converting XXXXX bug
#1199 opened Aug 6, 2024 by arteymix
Breaking changes for 2.9.0 enhancement Enhance the code or user experience rest-api Issues or pull requests involving the RESTful API
#1198 opened Aug 4, 2024 by arteymix
2 tasks
2
/annotations/search endpoint returns incorrect results
#1195 opened Jul 30, 2024 by oganm
1
commons-lang3 RandomUtils has gotten very slow performance regression Indicate that something that used to work is presently broken workaroud Indicate that a workaround exists or is in effect
#1194 opened Jul 29, 2024 by arteymix
1
1
Explore samples in Gemma via the REST API enhancement Enhance the code or user experience low priority rest-api Issues or pull requests involving the RESTful API
#1191 opened Jul 25, 2024 by arteymix
GemmaAndExperimentalFactorOntologyTest is timing out on the CI low priority regression Indicate that something that used to work is presently broken
#1186 opened Jul 13, 2024 by arteymix
Factor values can be duplicated when populating a continuous factor bug needs confirmation Issues that need to be confirmed or reliably reproduced
#1185 opened Jul 13, 2024 by arteymix
1
Increase rendering resolution of diagnostic plots enhancement Enhance the code or user experience gui Issues or pull requests involving the Web UI
#1184 opened Jul 13, 2024 by arteymix
UI components for single-cell single cell Issues related to single-cell data support
#1183 opened Jul 11, 2024 by arteymix
/expressionExperiment/showExpressionExperimentSubSet.html needs some attention enhancement Enhance the code or user experience single cell Issues related to single-cell data support
#1182 opened Jul 11, 2024 by arteymix
Fix colour scale for continuous factors in heatmap visualisation bug gui Issues or pull requests involving the Web UI
#1180 opened Jul 5, 2024 by ppavlidis
@ppavlidis
IllegalArgumentException: Cannot pass vectors from more than one quantitation type: QuantitationType Id=532865 Name=VALUE - Processed version General Type=QUANTITATIVE Type=AMOUNT Scale=LOG2 Representation=DOUBLE [Normalized] [Preferred] vs QuantitationType Id=532864 Name=VALUE - Processed version General Type=QUANTITATIVE Type=AMOUNT Scale=LOG2 Representation=DOUBLE [Normalized] [Preferred] bug rest-api Issues or pull requests involving the RESTful API
#1177 opened Jul 4, 2024 by arteymix 1.31.10
@arteymix
1
Use subsets as collection of cell populations bioassays single cell Issues related to single-cell data support
#1175 opened Jul 4, 2024 by arteymix
@arteymix
Remove usages of SimpleFormController enhancement Enhance the code or user experience gui Issues or pull requests involving the Web UI spring-4 Issues related to Spring 4
#1172 opened Jun 30, 2024 by arteymix 1.32.0
1
manually created ExpressionExperimentSets have "+" replacing spaces in the name and description bug
#1159 opened Jun 21, 2024 by ppavlidis
ProcessedExpressionDataCreateServiceTest.testComputeDevRankForExpressionExperimentB randomly fails bug low priority
#1158 opened Jun 21, 2024 by arteymix 1.31.10
Add a @MockBean annotation to automatically mock and reset beans in tests enhancement Enhance the code or user experience low priority
#1157 opened Jun 21, 2024 by arteymix
ProTip! Adding no:label will show everything without a label.