This is a Python wrapper for Gemma's RESTful API. Gemma is a web site, database and a set of tools for the meta-analysis, re-use and sharing of genomics data, currently primarily targeted at the analysis of gene expression profiles. Gemma contains data from thousands of public studies, referencing thousands of published papers.
The package requires Python3.10+.
Install it from a local copy
git clone [email protected]:PavlidisLab/gemmapy.git cd gemmapy pip install .
Install it from PyPI
pip install gemmapy
To get started with gemmapy, read the Tutorial.
The full documentation can be found at https://pavlidislab.github.io/gemmapy/.
To cite Gemma, please use: Lim, N. et al., Curation of over 10 000 transcriptomic studies to enable data reuse, Database, 2021.