Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Only consider the relevant subset of samples when assessing batch info #46

Closed
arteymix opened this issue Jun 18, 2020 · 1 comment
Closed

Only consider the relevant subset of samples when assessing batch info #46

arteymix opened this issue Jun 18, 2020 · 1 comment
Labels
enhancement
Milestone
2.1.13

Comments

@arteymix
Copy link
Member

No description provided.

@arteymix arteymix changed the title Only consider the relevant subset of experiments when assessing batch info Only consider the relevant subset of samples when assessing batch info Jun 18, 2020
@arteymix
Copy link
Member Author

arteymix commented Sep 4, 2024

To do that, we need to rewrite how Gemma looks up FASTQ header files to be by EE shortname instead of their associated GEO ID.

As a workaround, a45ed54 adds an --ignore-samples option.

@arteymix arteymix closed this as not planned Won't fix, can't repro, duplicate, stale Sep 4, 2024
@arteymix arteymix added this to the 2.1.13 milestone Sep 4, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement
Projects
None yet
Milestone
2.1.13
Development

No branches or pull requests
1 participant
@arteymix