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Issues: PavlidisLab/rnaseq-pipeline
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Handle SRA experiments with multiple lanes mapped on distinct runs
#94
opened Jul 3, 2024 by
arteymix
4 tasks
Metadata in Prefetch tasks should use a GSM ID, not a SRX ID.
bug
#90
opened Apr 4, 2024 by
arteymix
Reorganize high-level scripts into a rnaseq-pipeline-cli tool
enhancement
#89
opened Oct 18, 2023 by
arteymix
Batch information that has been deemed unuseable are not considered completed
#64
opened Sep 11, 2021 by
arteymix
Use luigi.TaskParameter for platforms and sources-specific tasks
enhancement
#62
opened Aug 16, 2021 by
arteymix
Trimmed FASTQs are not deleted when data is successfully submitted to Gemma
bug
#59
opened Jul 28, 2021 by
arteymix
Build and install the shared memory cleanup tool during initial setup
#58
opened Jun 25, 2021 by
arteymix
Add automated quality control checks before submitting data to Gemma
enhancement
#51
opened Jan 15, 2021 by
arteymix
5 tasks
Only consider the relevant subset of samples when assessing batch info
enhancement
#46
opened Jun 18, 2020 by
arteymix
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Updated in the last three days: updated:>2024-08-31.