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Reorganize high-level scripts into a rnaseq-pipeline-cli tool #89

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arteymix opened this issue Oct 18, 2023 · 0 comments
Open

Reorganize high-level scripts into a rnaseq-pipeline-cli tool #89

arteymix opened this issue Oct 18, 2023 · 0 comments
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@arteymix
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arteymix commented Oct 18, 2023

Tasks that should be covered via sub-commands:

  • submit experiments from a gsheet
  • submit experiments from a file
  • submit individual experiment
  • resubmit batch information
  • general luigi-wrapper task submissions (we can remove luigi-wrapper once that is finished)

This tool can be modeled on Bioluigi CLI.

@arteymix arteymix added this to the 2.2.0 milestone Sep 4, 2024
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