4.10.7

Updated doc, about equality and inequality constraints on node ages in mcmctree

fixed det calculation in matinv.

paml-4.10.5

changed ndata option in baseml/codeml.

paml-4.10.6

Changed

Changed ndata option in baseml/codeml, and added back the old option of one tree block for all datasets/alignments.

Edited the document.

v4.10.3

Changes

Changed ndata option in baseml and codeml.

Fixed a bug in the TipDate option in mcmctree which caused the program to fail to read the sampling dates.

Fixed bugs in pamp for ancestral sequence reconstruction.

Changed the default MCMC proposal to Bactrian-Laplace with m = 0.90.

The source code is inside the tgz files.

paml v4.10.0

Changes

• Edited code to remove compiler warnings
• Changed the calculation of initial values for mcmctree so that the ages are not too old.
• Fixed a bug which causes the tip-dating analysis in baseml and codeml to fail to print out a block of output including substitution rate per time unit and absolute age estimates.

v1.2

Released 1996