Build and Test GATK 4

Fix what looks like a bug in FlowBasedRead #3360

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Triggered via pull request November 7, 2023 19:47

lbergelson

opened #8576

lb_flowbasedbug

Status Failure

Total duration 1h 8m 13s

Artifacts 8

gatk-tests.yml

on: pull_request

check if the environment has privileges

build and push gatk docker to artifacts

Validate script WDLs using womtools

Validate generated WDLs using womtools

Matrix: wdlTests

Matrix: test

Matrix: testOnDocker

Annotations

3 errors

Java 17.0.6+10 build and test integration

Process completed with exit code 1.

Java 17.0.6+10 test on docker variantcalling

Process completed with exit code 1.

Java 17.0.6+10 test on docker integration

Process completed with exit code 1.

Artifacts

Produced during runtime

Name	Size
gatkDockerImage Expired	2.11 GB
test-results-17.0.6+10-cloud Expired	295 KB
test-results-17.0.6+10-integration Expired	197 MB
test-results-17.0.6+10-unit Expired	156 MB
test-results-docker-17.0.6+10-conda Expired	281 KB
test-results-docker-17.0.6+10-integration Expired	197 MB
test-results-docker-17.0.6+10-unit Expired	154 MB
test-results-docker-17.0.6+10-variantcalling Expired	11.1 MB