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Fix what looks like a bug in FlowBasedRead #8576

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lbergelson
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@ilyasoifer I noticed this method wasn't doing anything, it looks like it should have a return here.

Also, I made the logger static because it's probably expensive to allocate one for every read and you don't need to.

* also make the logger static so you're not allocating a new one for every read
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gatk-bot commented Nov 7, 2023

Github actions tests reported job failures from actions build 6789554372
Failures in the following jobs:

Test Type JDK Job ID Logs
integration 17.0.6+10 6789554372.11 logs
variantcalling 17.0.6+10 6789554372.2 logs
integration 17.0.6+10 6789554372.0 logs

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@lbergelson you are right. This check is anyway obsolete. I will submit a separate PR that deletes this check altogether. I suggest to close this PR for now

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Thanks @ilyasoifer. I'll close this one. I wasn't sure what the effect was, just saw that it looked wrong.

@lbergelson lbergelson closed this Nov 13, 2023
@lbergelson lbergelson deleted the lb_flowbasedbug branch November 13, 2023 18:02
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3 participants