Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Added an option to output a side-vcf with variants detected by assembly #7384

Merged
merged 5 commits into from
Oct 29, 2021

Conversation

jamesemery
Copy link
Collaborator

This should hopefully be a slightly less manual mechanism for answering the question "Did this variant actually get assembled or should I dig into the genotyper instead?" at larger scale. Also works for Mutect2.

Copy link
Contributor

@davidbenjamin davidbenjamin left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks good; no objections.

@jamesemery jamesemery force-pushed the je_addAssemblyVCFDebugOutputStream branch from 9366975 to ba0d679 Compare August 5, 2021 19:44
@droazen
Copy link
Collaborator

droazen commented Oct 29, 2021

@jamesemery What's the status of this one? Do you still want this merged?

@jamesemery jamesemery merged commit 29d5649 into master Oct 29, 2021
@jamesemery jamesemery deleted the je_addAssemblyVCFDebugOutputStream branch October 29, 2021 18:19
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

3 participants