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Add Mutect3 dataset generation to Mutect2 WDL #7992

Merged
merged 10 commits into from
Aug 18, 2022
Merged

Add Mutect3 dataset generation to Mutect2 WDL #7992

merged 10 commits into from
Aug 18, 2022

Commits on Aug 17, 2022

  1. continuous integration M2 tests single pair

    @davidbenjamin
    davidbenjamin committed Aug 17, 2022
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  2. remove Funcotator from M2 WDL (Funcotator has its own WDL)

    @davidbenjamin
    davidbenjamin committed Aug 17, 2022
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  3. simplify default inputs

    @davidbenjamin
    davidbenjamin committed Aug 17, 2022
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  4. simplifed file names

    @davidbenjamin
    davidbenjamin committed Aug 17, 2022
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  5. M# dataset options in M2 WDL

    @davidbenjamin
    davidbenjamin committed Aug 17, 2022
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  6. fix a very rare bug in Mutect3DatasetEngine

    @davidbenjamin
    davidbenjamin committed Aug 17, 2022
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  7. tidying PON WDL

    @davidbenjamin
    davidbenjamin committed Aug 17, 2022
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  8. few little womtool error fixes

    @davidbenjamin
    davidbenjamin committed Aug 17, 2022
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  9. ditto

    @davidbenjamin
    davidbenjamin committed Aug 17, 2022
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  10. whoops, more fixing json

    @davidbenjamin
    davidbenjamin committed Aug 17, 2022
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