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Adding argument to GenotypeGVCFs to keep only RAW_GT_COUNT #7996

Merged
merged 13 commits into from
Oct 24, 2022
Merged

Adding argument to GenotypeGVCFs to keep only RAW_GT_COUNT #7996

merged 13 commits into from
Oct 24, 2022

Commits on Aug 19, 2022

  1. adding argument to GenotypeGVCFs to keep only RAW_GT_COUNT (not all r… 

    …aw annotations)
    @meganshand
    meganshand committed Aug 19, 2022
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Commits on Aug 24, 2022

  1. making the argument more general

    @meganshand
    meganshand committed Aug 24, 2022
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  2. making arg optional

    @meganshand
    meganshand committed Aug 24, 2022
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Commits on Sep 21, 2022

  1. WIP

    @meganshand
    meganshand committed Sep 21, 2022
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Commits on Sep 26, 2022

  1. WIP - adding annotation list as argument

    @meganshand
    meganshand committed Sep 26, 2022
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Commits on Sep 27, 2022

  1. Integrate GenotypeGVCFsAnnotationArgumentCollection.

    @cmnbroad @meganshand
    cmnbroad authored and meganshand committed Sep 27, 2022
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Commits on Sep 30, 2022

  1. trying to fix annotation argument

    @meganshand
    meganshand committed Sep 30, 2022
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  2. addressing comments

    @meganshand
    meganshand committed Sep 30, 2022
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  3. fixing ReblockGvcf tests

    @meganshand
    meganshand committed Sep 30, 2022
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Commits on Oct 6, 2022

  1. addressing argument collection comments

    @meganshand
    meganshand committed Oct 6, 2022
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Commits on Oct 13, 2022

  1. Update src/main/java/org/broadinstitute/hellbender/cmdline/GATKPlugin… 

    …/GATKAnnotationPluginDescriptor.java

Co-authored-by: Chris Norman <[email protected]>
    @meganshand @cmnbroad
    meganshand and cmnbroad committed Oct 13, 2022
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Commits on Oct 14, 2022

  1. addressing comments

    @meganshand
    meganshand committed Oct 14, 2022
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Commits on Oct 18, 2022

  1. cleaning up

    @meganshand
    meganshand committed Oct 18, 2022
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