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Upgrade htsjdk to v3.0.1 and picard to 2.27.5 #8025

Merged
merged 4 commits into from
Oct 12, 2022
Merged

Upgrade htsjdk to v3.0.1 and picard to 2.27.5 #8025

merged 4 commits into from
Oct 12, 2022

Commits on Oct 11, 2022

  1. Upgrade htsjdk to v3.0.0. 

    This upgrades htsjdk to v3.0.0 which was attempted in #7867 and then reverted in #7960
in order to unblock the jukebox merge.
    @lbergelson
    lbergelson committed Oct 11, 2022
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  2. fix isReference() bug

    @lbergelson
    lbergelson committed Oct 11, 2022
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  3. Update to latest Picard/HTSJDK and fix compilation

    @droazen @lbergelson
    droazen authored and lbergelson committed Oct 11, 2022
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Commits on Oct 12, 2022

  1. this seems to fix it

    @lbergelson
    lbergelson committed Oct 12, 2022
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