Make M2 haplotype and clustered events filters smarter about germline events #8717
Codecov / codecov/project
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Mar 25, 2024 in 1s
86.405% (-0.002%) compared to c97faf6
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86.405% (-0.002%) compared to c97faf6
Details
Codecov Report
Merging #8717 (9ec9bc6) into master (c97faf6) will decrease coverage by
0.002%.
Report is 10 commits behind head on master.
The diff coverage is97.826%.
Additional details and impacted files
@@ Coverage Diff @@
## master #8717 +/- ##
===============================================
- Coverage 86.407% 86.405% -0.002%
- Complexity 39882 39929 +47
===============================================
Files 2371 2371
Lines 187596 187784 +188
Branches 20532 20544 +12
===============================================
+ Hits 162096 162255 +159
- Misses 18272 18290 +18
- Partials 7228 7239 +11 | Files | Coverage Δ | |
|---|---|---|
| ...lkers/ReferenceConfidenceVariantContextMerger.java | 94.212% <100.000%> (+0.037%) |
⬆️ |
| ...hellbender/tools/walkers/mutect/Mutect2Engine.java | 92.901% <ø> (+0.309%) |
⬆️ |
| ...alkers/mutect/filtering/ClusteredEventsFilter.java | 100.000% <100.000%> (ø) |
|
| ...kers/mutect/filtering/FilteredHaplotypeFilter.java | 98.077% <100.000%> (+0.299%) |
⬆️ |
| .../mutect/filtering/M2FiltersArgumentCollection.java | 93.023% <100.000%> (+0.166%) |
⬆️ |
| ...lkers/mutect/filtering/Mutect2FilteringEngine.java | 94.928% <100.000%> (ø) |
|
| ...ute/hellbender/utils/variant/GATKVCFConstants.java | 80.000% <ø> (ø) |
|
| ...e/hellbender/utils/variant/GATKVCFHeaderLines.java | 95.545% <100.000%> (+0.022%) |
⬆️ |
| .../tools/walkers/mutect/SomaticGenotypingEngine.java | 95.067% <97.297%> (+1.285%) |
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| ...r/tools/walkers/mutect/Mutect2IntegrationTest.java | 94.769% <96.875%> (+0.175%) |
⬆️ |
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