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An example on body bone mineral density
jinghuazhao edited this page Jun 3, 2018
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An example is provided on a recent study of body bone mineral density (TBBMD). The relevant files all have prefix bmd- and some are listed as follows,
| Files | Description |
|---|---|
bmd.sh |
to generate chromosome-specific z-scores |
bmd.do |
Stata program to flag non-missing individuals |
bmd/TBBMD.gz |
the GWAS summary statistics |
bmd-twas.sh |
script for TWAS by SNP |
bmd-twas2.sh |
region selection based on position rather than rsid |
bmd-summary.sh |
To put together all imputation results into bmd.imp |
The automation would involve bmd-twas.sh and bmd-twas2.sh.