List of software/websites/databases/other stuff for genome engineering
-
Updated
Jun 20, 2024
List of software/websites/databases/other stuff for genome engineering
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
Synthego ICE - Inference of CRISPR Editing software
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
Flexible analysis of high-content CRISPR screening
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
Collection of R packages that work in harmony for CRISPR gRNA design
A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
Tutorials for the crisprVerse
CRISPR, faster, better – The Crackling method for whole-genome target detection
ProTiler method for the analysis and visualization of CRISPR screens with tiling-sgRNA design
A cross-platform Graphical Analysis Tool for high-throughput CRISPR-based genome editing evaluation
Useful human and mouse data for the crisprVerse ecosystem
CB2-Experiments is the repository of scripts and data of experiments were performed to benchmark the performance of CB2.
Visualization of CRISPR guide RNAs (gRNAs)
Add a description, image, and links to the crispr-analysis topic page so that developers can more easily learn about it.
To associate your repository with the crispr-analysis topic, visit your repo's landing page and select "manage topics."