Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
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Updated
May 17, 2019 - Python
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
Synthego ICE - Inference of CRISPR Editing software
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
Flexible analysis of high-content CRISPR screening
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
ProTiler method for the analysis and visualization of CRISPR screens with tiling-sgRNA design
A program used to find indels on target gene edited by CRISPR/Cas9
Identify and annotate mutations from genome editing assays.
Anaylsis for 3D CRISPR screens. Rust core with Python wrapping.
InDels analysis of CRISPR lines by NGS amplicon sequencing technology for a multicopy gene family.
Bioinformatics pipeline to analyze CRISPR synthetic lethal and synthetic viable screens
[This is an archived repository, see the current version in Arc Institute GitHub]
Fork of Azimuth (Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency), updated to work with Python 3.10+
CRISPR-Cas9 Excision Therapy Suitability
Analysis codes for high-throughput short read sequencing data. Especially for RCP-PCR experiments on clonal CRISPR KO samples.
Analysis of CRISPR libraries
CRISPRSeqSim is a tool that simulates results of CRISPR/cas editing fragments target sequencing.
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