Anaylsis for 3D CRISPR screens. Rust core with Python wrapping.
-
Updated
Oct 20, 2022 - Python
Anaylsis for 3D CRISPR screens. Rust core with Python wrapping.
CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens. Implemented as R shiny app.
BWA-based alignment of CRISPR gRNA spacer sequences
CRISPR-Cas9 Excision Therapy Suitability
Useful human and mouse data for the crisprVerse ecosystem
Statistical Analysis of multiplexed CRISPR / shRNA Screens using MAGeCK (deprecated)
UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline
Research associated to CRISPR-Cas. Completed under Dr. Manuel Lladser at CU boulder
MinTEs is a computational framework that aims at finding optimised reference templates given user-specified parameters (i.e. CRISPR-Cas9 library, reference gene templates, percentage of subsampling).
Tutorials for the crisprVerse
Shiny interface for CRISPR gRNAs designed with the crisprVerse
Pre-trained models for the crisprScore package
Small RNA-Seq analysis for Yan J., Ravisankar P., Zhao A., Li H., Oyler-Castrillo P., Solley S., Chan M., Parsons L., Adamson B. (2023). An endogenous small RNA-binding protein safeguards prime editing. Manuscript submitted for publication.
Analysis of CRISPR libraries
Daniel Adediran
Collection of R packages that work in harmony for CRISPR gRNA design
Bowtie-based alignment of CRISPR gRNA spacer sequences
CRISPRSeqSim is a tool that simulates results of CRISPR/cas editing fragments target sequencing.
Add a description, image, and links to the crispr-analysis topic page so that developers can more easily learn about it.
To associate your repository with the crispr-analysis topic, visit your repo's landing page and select "manage topics."