CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens. Implemented as R shiny app.
-
Updated
Apr 11, 2017 - HTML
CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens. Implemented as R shiny app.
A program used to find indels on target gene edited by CRISPR/Cas9
Search guide-RNA sequences given a genome or gene sequence
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
Statistical Analysis of multiplexed CRISPR / shRNA Screens using MAGeCK (deprecated)
Pre-processing of multiplexed CRISPR / shRNA Screens (deprecated)
CRISPR-Cas9 Excision Therapy Suitability
Research associated to CRISPR-Cas. Completed under Dr. Manuel Lladser at CU boulder
TP final de la materia 7550 - Introduccion a los sistemas inteligentes
CB2-Experiments is the repository of scripts and data of experiments were performed to benchmark the performance of CB2.
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
InDels analysis of CRISPR lines by NGS amplicon sequencing technology for a multicopy gene family.
Bioinformatics pipeline to analyze CRISPR synthetic lethal and synthetic viable screens
Analysis codes for high-throughput short read sequencing data. Especially for RCP-PCR experiments on clonal CRISPR KO samples.
MinTEs is a computational framework that aims at finding optimised reference templates given user-specified parameters (i.e. CRISPR-Cas9 library, reference gene templates, percentage of subsampling).
Add a description, image, and links to the crispr-analysis topic page so that developers can more easily learn about it.
To associate your repository with the crispr-analysis topic, visit your repo's landing page and select "manage topics."