The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

University of Cambridge Part III Systems Biology course, practical exercises for learning flux balance analysis

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

This repository contains all changes made to the strain specific models of Corynebacterium striatum.

"Maps for when the living gets tough: Maneuvering through a hostile energy landscape" | Mondeel, Thierry D.G.A. Rehman, Samrina Zhang, Yanfei Verma, Malkhey Dürre, Peter Barberis, Matteo Westerhoff, Hans V. | 2016 | IFAC-PapersOnLine |

Figure 5 - Learning to read and write in evolution: from static pseudoenzymes and pseudosignalers to dynamic gear shifters

Analysis of neutrophil metabolic activity during metastasis using single-cell RNASeq and COnstraint-Based Reconstruction and Analysis.

Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.

Analysis of neutrophil metabolic activity during metastasis using single-cell RNASeq and COnstraint-Based Reconstruction and Analysis.

Modeling the metabolic changes during the epithelial-to-mesenchymal transition.