💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
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Updated
Jul 27, 2024 - Python
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
Constraint-based modeling of metabolism using Mixed Integer Optimization
Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
Library to perform metabolic engineering tasks
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Flux Capacitor toolkit for systems biology
Python implementation of FastSL
A metabolic modeling workflow for communities of organisms in an nasal medium.
This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function
Bi-level regularized flux balance analysis of Synechococcus spp. PCC 7002
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