miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
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Updated
Apr 27, 2022 - Perl
miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.
Bioinformatics Pipeline
miRSim Synthetic Sequence Simulator
scripts and resources for performing miRNA sequencing analysis using tools like mirPRo and miRDeep2. Explore the code to process reads, map them to the genome, quantify known miRNAs, identify novel miRNAs, and browse the results
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
Scripts of Final Master Project
All the R scripts I used during my time as a grad student at Clemson University
An open-source R package to comprehensively explore the role of impaired miRNA regulatory networks in complex biological conditions.
Workflow Template
An awesome microRNA-sequencing pipeline
multiMiR package in R, providing gene-miRNA-lncRNA interactions for ceRNA network construction
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