This tutorial is created for educational purpose
-
Updated
Aug 20, 2024 - R
This tutorial is created for educational purpose
miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
Pipeline for generating RNAseq-based cancer patient reports
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
RNA-Seq data analysis: whole transcriptome, stranded, dUTP method
An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)
Docker Integrated Comparison of Alternative Splicing (AS) Tools. Benchmarking AS tools and genomic alignment tools.
A comprehensive pipeline for RNAseq data analysis
circs_snake : a snakemake-based circRNA detection workflow
An RNASeq snakemake workflow using the Tuxedo suite.
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
RNA-seq replication analysis.
Snakemake workflow designed to perform RNASeq transcrpotime expression estimation with Salmon
A python package for working with inputs to and outputs from the toil-rnaseq pipeline
These are tutorials on a subset of tools available for processing raw RNAseq data. This if for HISAT2_SAMtools_Stringtie_gffcompare_ballgown pipeline or HISAT2_SAMtools_Stringtie_PrepDEanalysis.py_DESeq2 pipeline
Snakemake workflow for Salmon quantification and FastQC quality controls
Pipeline for calling and analyzing variants from RNA-Seq data
Simple Snakemake RNA-Seq pipeline
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