Nextflow workflow for performing DIA proteomics
-
Updated
Sep 5, 2024 - Nextflow
Nextflow workflow for performing DIA proteomics
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
(Meta-)genome screening for functional and natural product gene sequences
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Simple bacterial assembly and annotation pipeline
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
Call and score variants from WGS/WES of rare disease patients.
A single-cell RNAseq pipeline for 10X genomics data
Add a description, image, and links to the workflow topic page so that developers can more easily learn about it.
To associate your repository with the workflow topic, visit your repo's landing page and select "manage topics."