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Releases: vibaotram/baseDmux

Version 1.1.1

24 Sep 19:46
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  • updated documentation
  • implemented an automatic download of latest singularity containers (guppy 6.3.7) with https URL of files on Drive IRD
  • read id list for splitting fast5 files into genome bins is now created with the R script that handles creating genome specific fastq files. Hopefully, this solve occasional problems with fast5_subset from the ont api that failled because of supposedly too long read names. Will ultimately use the ONT POD5 format and tools.
  • python scripts interface clarified between slurm and cluster. Documentation indicates that only local and slurm modes will be kept for configure
  • created after merge of XoCo branch #5

scratch version

03 Nov 05:11
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Running on snakemake interface

Tools:

  • Guppy 4.0.14 GPU and 3.6.0 CPU version
  • Deepbinner 0.2.0
  • MinIONQC 1.4.1
  • Multiqc 1.8
  • Porechop 0.2.4
  • Filtlong 0.2.0