This repository contains definition files the Biodiverse (Laffan et al., 2010) containers.
To build the Docker image with Biodiverse run:
docker build --tag biodiverse --file Dockerfile_NoPerlbrew .
The Dockerfile_NoPerlbrew should be present in the current directory.
A ready-to-use image is available at Docker Hub and can be downloaded with:
docker pull vmikk/biodiverse:1.5.0
To build the Singularity image with Biodiverse run:
sudo singularity build Biodiverse.sif SingularityDef_NoPerlbrew.def
The SingularityDef_NoPerlbrew.def should be present in the current directory.
A ready-to-use image is available at the Singularity Library and can be downloaded with:
singularity pull --arch amd64 library://vmiks/gbif/biodiverse:1-5-0
Laffan SW, Lubarsky E, Rosauer DF (2010) Biodiverse, a tool for the spatial analysis of biological and related diversity. Ecography, 33: 643-647. DOI: 10.1111/j.1600-0587.2010.06237.x