Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

addressing issue #132 #137

Merged
merged 22 commits into from
Feb 1, 2023
Merged

addressing issue #132 #137

merged 22 commits into from
Feb 1, 2023

Commits on Jul 28, 2022

  1. adding rtrim function for trailing char in primer files

    @cmaceves
    cmaceves committed Jul 28, 2022
    Configuration menu
    Copy the full SHA
    97c35c4 View commit details
    Browse the repository at this point in the history

Commits on Jul 29, 2022

  1. adding new variable to primer_trim and adding call to populate primer… 

    … pairs
    @cmaceves
    cmaceves committed Jul 29, 2022
    Configuration menu
    Copy the full SHA
    6b9ed98 View commit details
    Browse the repository at this point in the history

  2. adding print code for primers to help debug

    @cmaceves
    cmaceves committed Jul 29, 2022
    Configuration menu
    Copy the full SHA
    f191550 View commit details
    Browse the repository at this point in the history

  3. changing the return types of the primer pair populate function to ret… 

    …ain pair indice
    @cmaceves
    cmaceves committed Jul 29, 2022
    Configuration menu
    Copy the full SHA
    07dff38 View commit details
    Browse the repository at this point in the history

  4. adding name to print primer statements

    @cmaceves
    cmaceves committed Jul 29, 2022
    Configuration menu
    Copy the full SHA
    93dfdac View commit details
    Browse the repository at this point in the history

  5. add function to find primer pair

    @cmaceves
    cmaceves committed Jul 29, 2022
    Configuration menu
    Copy the full SHA
    fc8a3be View commit details
    Browse the repository at this point in the history

  6. passing appropriate information to primer trim function

    @cmaceves
    cmaceves committed Jul 29, 2022
    Configuration menu
    Copy the full SHA
    3ce6ee7 View commit details
    Browse the repository at this point in the history

Commits on Aug 2, 2022

  1. reverting back the populate primers function and instead passing by r… 

    …eference
    @cmaceves
    cmaceves committed Aug 2, 2022
    Configuration menu
    Copy the full SHA
    b5d75f5 View commit details
    Browse the repository at this point in the history

  2. saving for branch switch

    @cmaceves
    cmaceves committed Aug 2, 2022
    Configuration menu
    Copy the full SHA
    7fc709e View commit details
    Browse the repository at this point in the history

Commits on Aug 5, 2022

  1. adding function to get overlapping primers for unpaired reads from pa… 

    …ir info file
    @cmaceves
    cmaceves committed Aug 5, 2022
    Configuration menu
    Copy the full SHA
    6695b56 View commit details
    Browse the repository at this point in the history

  2. removing extra unused variable

    @cmaceves
    cmaceves committed Aug 5, 2022
    Configuration menu
    Copy the full SHA
    99ccc6e View commit details
    Browse the repository at this point in the history

Commits on Aug 30, 2022

  1. adding test data, template for test code

    @cmaceves
    cmaceves committed Aug 30, 2022
    Configuration menu
    Copy the full SHA
    29b6a30 View commit details
    Browse the repository at this point in the history

Commits on Aug 31, 2022

  1. updating the primer pair test the call trimming

    @cmaceves
    cmaceves committed Aug 31, 2022
    Configuration menu
    Copy the full SHA
    3c8792b View commit details
    Browse the repository at this point in the history

Commits on Jan 23, 2023

  1. removing extra function trim_primers_better and switching the way isi… 

    …ze is calculated
    @cmaceves
    cmaceves committed Jan 23, 2023
    Configuration menu
    Copy the full SHA
    8011622 View commit details
    Browse the repository at this point in the history

Commits on Jan 24, 2023

  1. revert to the original way isize_flag is calculated

    @cmaceves
    cmaceves committed Jan 24, 2023
    Configuration menu
    Copy the full SHA
    75eb684 View commit details
    Browse the repository at this point in the history

Commits on Jan 25, 2023

  1. changing loc of declaration of variable for github action macos

    @cmaceves
    cmaceves committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    69f0ed7 View commit details
    Browse the repository at this point in the history

  2. changing the declaration of cur_depth back, suppressing warning in co… 

    …mpiler
    @cmaceves
    cmaceves committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    f823ae1 View commit details
    Browse the repository at this point in the history

  3. Revert "revert to the original way isize_flag is calculated" 

    This reverts commit 75eb684.
    @cmaceves
    cmaceves committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    73fb315 View commit details
    Browse the repository at this point in the history

  4. attempt to silence specific warning on macos build

    @cmaceves
    cmaceves committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    983d233 View commit details
    Browse the repository at this point in the history

  5. going back to the original way isize was called

    @cmaceves
    cmaceves committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    66d4d9f View commit details
    Browse the repository at this point in the history

  6. silencing the unused variable warning

    @cmaceves
    cmaceves committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    1c8ef6c View commit details
    Browse the repository at this point in the history

  7. changing workflow to use stable mac version and removing trial flag f… 

    …rom Makefile that was meant to correct compile error
    @cmaceves
    cmaceves committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    cbac14b View commit details
    Browse the repository at this point in the history