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Passing implementation of custom ploidy regions in HaplotypeCaller #8609

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merged 5 commits into from
Dec 11, 2023

Update new test for copying arg sync

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Merged

Passing implementation of custom ploidy regions in HaplotypeCaller #8609

Update new test for copying arg sync
0e44296
Select commit
Failed to load commit list.
Codecov / codecov/patch succeeded Dec 8, 2023 in 1s

86.131% of diff hit (target 86.118%)

View this Pull Request on Codecov

86.131% of diff hit (target 86.118%)

Annotations

Check warning on line 611 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L611 

Added line #L611 was not covered by tests

Check warning on line 708 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L708 

Added line #L708 was not covered by tests

Check warning on line 991 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L991 

Added line #L991 was not covered by tests

Check warning on line 994 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L993-L994 

Added lines #L993 - L994 were not covered by tests

Check warning on line 1015 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L1015 

Added line #L1015 was not covered by tests

Check warning on line 1018 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L1017-L1018 

Added lines #L1017 - L1018 were not covered by tests

Check warning on line 1039 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L1039 

Added line #L1039 was not covered by tests

Check warning on line 1042 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L1041-L1042 

Added lines #L1041 - L1042 were not covered by tests
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