Passing implementation of custom ploidy regions in HaplotypeCaller #8609
86.131% of diff hit (target 86.118%)
View this Pull Request on Codecov
86.131% of diff hit (target 86.118%)
Annotations
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L611
Added line #L611 was not covered by tests
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L708
Added line #L708 was not covered by tests
codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L991
Added line #L991 was not covered by tests
codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L993-L994
Added lines #L993 - L994 were not covered by tests
codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L1015
Added line #L1015 was not covered by tests
codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L1017-L1018
Added lines #L1017 - L1018 were not covered by tests
codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L1039
Added line #L1039 was not covered by tests
codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L1041-L1042
Added lines #L1041 - L1042 were not covered by tests