Passing implementation of custom ploidy regions in HaplotypeCaller #8609
Codecov / codecov/project
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Dec 8, 2023 in 0s
86.402% (+0.284%) compared to e37b344
View this Pull Request on Codecov
86.402% (+0.284%) compared to e37b344
Details
Codecov Report
Merging #8609 (0e44296) into master (e37b344) will increase coverage by
0.284%.
Report is 2 commits behind head on master.
The diff coverage is86.131%.
Additional details and impacted files
@@ Coverage Diff @@
## master #8609 +/- ##
===============================================
+ Coverage 86.118% 86.402% +0.284%
- Complexity 39564 39755 +191
===============================================
Files 2365 2364 -1
Lines 186777 187064 +287
Branches 20430 20484 +54
===============================================
+ Hits 160849 161627 +778
+ Misses 18766 18226 -540
- Partials 7162 7211 +49 | Files | Coverage Δ | |
|---|---|---|
| .../tools/copynumber/formats/records/SimpleCount.java | 81.481% <100.000%> (+23.587%) |
⬆️ |
| ...tools/walkers/haplotypecaller/HaplotypeCaller.java | 84.615% <ø> (ø) |
|
| ...otypecaller/HaplotypeCallerArgumentCollection.java | 100.000% <100.000%> (ø) |
|
| ...s/haplotypecaller/RampedHaplotypeCallerEngine.java | 55.116% <80.000%> (+0.298%) |
⬆️ |
| ...walkers/haplotypecaller/HaplotypeCallerEngine.java | 69.672% <93.651%> (+2.627%) |
⬆️ |
| ...aplotypecaller/HaplotypeCallerIntegrationTest.java | 91.945% <74.545%> (-0.994%) |
⬇️ |
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