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Molecular Signatures Database

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tursynay edited this page Dec 5, 2023 · 1 revision

Original Source: Molecular Signatures Database

Description: Molecular Signatures Database Overview The Molecular Signatures Database (MSigDB) is a resource of tens of thousands of annotated gene sets for use with GSEA software, divided into Human and Mouse collections. From this web site, you can

  • Examine a gene set and its annotations. See, for example, the HALLMARK_APOPTOSIS human gene set page.
  • Browse gene sets by name or collection.
  • Search for gene sets by keyword.
  • Investigate gene sets:
    • Compute overlaps between your gene set and gene sets in MSigDB.
    • Categorize members of a gene set by gene families.
    • View the expression profile of a gene set in a provided public expression compendia.
    • Investigate the gene set in the online biological network repository NDEx
  • Download gene sets.

Example edge:

URL: https://www.gsea-msigdb.org/gsea/msigdb

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Knowledge Providers (KP)

Autonomous Relay Agents (ARA)

Autonomous Relay System (ARS)

Standards and Reference Implementation (SRI)

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